Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1888 82.4 5e-14 seq3167 77.0 2e-12 >seq1888 Length=3642 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| || |||| || ||||||| ||||||||||| |||||||||||||||||||| Sbjct 1093 CTCACTGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1036 Query 109 TAATACAACGCAAGCT 124 |||| ||| ||||||| Sbjct 1035 TAAT-CAATGCAAGCT 1021 >seq3167 Length=1716 Score = 77.0 bits (84), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 259 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 202 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||| ||||||| Sbjct 201 GGACGTAAT-CAATGCAAGCT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300786841880