Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1888 309 6e-82 seq3167 217 3e-54 >seq1888 Length=3642 Score = 309 bits (342), Expect = 6e-82 Identities = 225/260 (87%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 798 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 857 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| | | || ||||||| Sbjct 858 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGGGGTCAGCGAGTTC-- 915 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||||| |||| | |||||||||||||| | | ||||||||||||||||||||| Sbjct 916 ---CTTGGCCGAAAGGCCCGGGTAATCTTGTTAGCCCCCGTCGTGCTGGGGATAGAGCAT 972 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||||||||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 973 TGCAATTATTGCTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 1032 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 1033 TTACGTCCCTGCCCTTTGTA 1052 >seq3167 Length=1716 Score = 217 bits (240), Expect = 3e-54 Identities = 176/213 (83%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 116 AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAG 175 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGT 60 Query 176 CCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCT 235 |||||||| | |||||| || |||||||||||||||||| || ||||||| Sbjct 61 TCAACGAGTATACAACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCT 120 Query 236 GGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295 |||||||| |||||||| | |||| |||||||||| |||||||| ||| ||||| Sbjct 121 AGGGATAGACTGTTGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCAT 180 Query 296 CAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| || |||||||||||||||||||||||| Sbjct 181 CAGCTTGCATTGATTACGTCCCTGCCCTTTGTA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947155803648