Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2055 659 0.0 seq1027 127 7e-27 >seq2055 Length=3182 Score = 659 bits (730), Expect = 0.0 Identities = 423/458 (92%), Gaps = 5/458 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2730 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 2789 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 2790 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 2849 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||| ||||||||||||| |||||| ||| || |||| |||| |||||||||||| Sbjct 2850 AGCCCACGAAGGACCTTAAAACCAGAATTTGGACG-TGAAT-CCAGCCCCGCTTCATTGA 2907 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| ||||||||||||||||| |||||||| |||||||| || Sbjct 2908 ATAAGTAAAAAAACAATAGGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 2964 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 2965 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 3024 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3025 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 3084 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3085 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 3144 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 |||||||||||||||||||||||||||||||||||||| Sbjct 3145 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 3182 >seq1027 Length=9219 Score = 127 bits (140), Expect = 7e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 8495 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 8436 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||||||||||||||||||||||| Sbjct 8435 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 8401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635123701568