Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2055 208 1e-51 seq1027 125 1e-26 >seq2055 Length=3182 Score = 208 bits (230), Expect = 1e-51 Identities = 153/173 (88%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || ||| || ||||||||||||||||||||| |||| |||||| Sbjct 2494 GTACGAGAGGAACCGCTGA-TTCGGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 2437 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 2436 GCCGCGACGCTACCATCCGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 2377 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGC 173 ||||| |||||| | | || |||| | |||| ||| | |||||||||||||| Sbjct 2376 GAACGCGGTGATAC-CACCCGCACGT-ATAGTTGGACAAGAATAGGCTTCGGC 2326 >seq1027 Length=9219 Score = 125 bits (138), Expect = 1e-26 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| ||||| | |||| || ||| Sbjct 8821 GTACGAGAGGAACCGTTGG-TTCAGA-TAATTGGTAACTGCGGTTAGCTGAAAAGCTAGT 8878 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 8879 GCCGCCAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 8936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819162970624