Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1055 224 3e-56 seq2055 91.5 4e-16 >seq1055 Length=8955 Score = 224 bits (248), Expect = 3e-56 Identities = 182/218 (83%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCAT 347 || ||||||| ||||||||||| | ||| |||| ||| ||| || |||| Sbjct 8492 GCATTGGTTTCA-ATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTGATGCAT 8550 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| |||| |||||| |||||||||||||||| | | || ||| Sbjct 8551 GTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTGGACTATA 8610 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCA 466 |||||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||| Sbjct 8611 ACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCA 8670 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| ||||||||||||||| Sbjct 8671 TGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 8708 >seq2055 Length=3182 Score = 91.5 bits (100), Expect = 4e-16 Identities = 50/50 (100%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510329524736