Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq911 253 8e-65 seq2060 132 2e-28 >seq911 Length=11140 Score = 253 bits (280), Expect = 8e-65 Identities = 243/316 (77%), Gaps = 38/316 (12%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 114 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 173 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGA 507 ||||| ||||| |||||||||||| || |||| |||| | || Sbjct 174 AACCCCAGCGCGAAATGAAAGTGAAGGGCAGCGCAAGTTGTCTGAGGTAGGAAACGTTGC 233 Query 508 GGGT----------------GCACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 ||| |||| ||||||||||| ||| | ||||| || |||| Sbjct 234 GGGCTTCGGTCTGCGGCGTGGCACTATCGACCGATCATGA-GCCTTCGTGGTGAAAGATT 292 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 293 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 352 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| Sbjct 353 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAAC 412 Query 668 TTGGGTATAGGGGCGA 683 |||||||||||||||| Sbjct 413 TTGGGTATAGGGGCGA 428 >seq2060 Length=3240 Score = 132 bits (146), Expect = 2e-28 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 3125 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 3184 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 ||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||| Sbjct 3185 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTT 3240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079902145100