Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04]
4,562 sequences; 39,184,277 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq4139 241 4e-61
>seq4139
Length=1145
Score = 241 bits (266), Expect = 4e-61
Identities = 354/498 (71%), Gaps = 36/498 (7%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1120 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 1061
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126
|||||||| ||||| ||||||||||||| ||||| | | | |||| | |
Sbjct 1060 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTGCTAATTTTT-----ATCTAAAAA 1006
Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186
| || | | | | ||||| | ||||||| |||||||||||||||
Sbjct 1005 TTTAGAT--------------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 963
Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244
| |||| ||||| |||||| ||| |||||||||||||| || |||||||| | |
Sbjct 962 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATCGTTAGTTGCTAATTT 903
Query 245 ATT------AAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298
||| || | ||||||| | ||| | |||||||||||
Sbjct 902 ATTAAAAAAAATAAAAGTACTCTAACGAAAAAATTAATGATAGGTTAATGGAAGGTGGGG 843
Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358
| |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || |||
Sbjct 842 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAAT 784
Query 359 -ACAAAGGGCAGCGAAACCG---CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414
|||| | | || | | | | | ||||||| | |||| | ||| |||||
Sbjct 783 CACAATGAGAGGCAATAATGATAAAAATTGGAGCAAAT-CTTTAAAAATTATCTTAGTTC 725
Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474
||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| |||||
Sbjct 724 GGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGCA 665
Query 475 TGCTACGGTGAATACGTT 492
|||| ||||||||| |||
Sbjct 664 TGCTGCGGTGAATATGTT 647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503931387520
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |