Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq911 509 5e-142 >seq911 Length=11140 Score = 509 bits (564), Expect = 5e-142 Identities = 394/461 (85%), Gaps = 13/461 (3%) Strand=Plus/Minus Query 84 CCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCC-GCGAAGGACC- 141 |||||||||||||||||||||||| ||||| || || | ||| || || || | || Sbjct 2212 CCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCGCCCGAGCAAAAGCCCA 2153 Query 142 ---TTAACGCCAGAAAA-TG-GTCGGTGAAGAC---CAGTTCCG-CTTCATTGATTAAGT 192 ||| | |||| || | | | || | | ||| | | | |||| | ||||| Sbjct 2152 GACTTACATCTAGAACTGTGCGACCGCGAGGCCTCACAGATGCTACATCATGGTATAAGT 2093 Query 193 aaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTAC 252 |||| ||| | || ||||||||||||||| || | | | |||||||||||||||| Sbjct 2092 AAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTCCCACTTATTCTAC 2035 Query 253 ACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCC 312 ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 2034 ACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCC 1975 Query 313 CGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1974 CGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACA 1915 Query 373 GTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1914 GTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTA 1855 Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1854 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTT 1795 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1794 TGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1754 Score = 127 bits (140), Expect = 7e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 10824 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 10765 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||||||||||||||||||||||| Sbjct 10764 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 10730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635125402176