Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933405.1_202017-01-04] 4,562 sequences; 39,184,277 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq187 259 4e-64 seq18 241 1e-58 >seq187 Length=41780 Score = 259 bits (286), Expect = 4e-64 Identities = 529/781 (68%), Gaps = 10/781 (1%) Strand=Plus/Plus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||||||||||| ||||| | ||| || |||||||| || || | ||| || || | | Sbjct 20091 CCACAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG 20150 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||| | ||| ||| ||||| || || |||| || ||||| | ||||| || | Sbjct 20151 TGTACTCCATAATCTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGT 20210 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||| ||| || |||||||||| |||| |||| ||| ||||||| || | Sbjct 20211 TCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCG 20270 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA---CGTAC-CGCCCTACCT 66226 || | ||||||| ||| || | || || | ||| || | ||||| ||| Sbjct 20271 CGTCCAGGATGGCGAACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCT 20330 Query 66227 TTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACAT 66286 | ||||| | ||||| || ||||| || ||||| ||| | || | Sbjct 20331 TC----TCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCG 20386 Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 || || | || || | || ||| | || | | ||| ||||| ||| || Sbjct 20387 GGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAAC 20446 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGA 66406 ||||| || | ||| || ||||||||||| ||||| || || ||| ||| ||||||| Sbjct 20447 AGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGG 20506 Query 66407 TTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCG 66466 || ||||||| || |||||||| || | ||| || ||||| || ||||||||||||||| Sbjct 20507 TTCTTGCGCAGCTCCAGGAACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCG 20566 Query 66467 AACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACA 66526 |||||||| | || ||||| || || ||||| || ||||| || | |||||||| Sbjct 20567 AACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACC 20626 Query 66527 CGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT 66586 | || ||| || | || |||||| ||| || || |||||| ||| | | | |||| Sbjct 20627 CTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTCGT 20685 Query 66587 -GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || || || | ||| | | | | |||||||| |||||| ||| |||||| || || Sbjct 20686 GGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCA 20745 Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | | || | | ||||| ||||| ||||| ||| |||| ||| ||| | || Sbjct 20746 CTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACA 20805 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 || || || || || ||| |||| ||||| ||||| || ||||||||||| Sbjct 20806 CGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAA 20865 Query 66766 G 66766 | Sbjct 20866 G 20866 >seq18 Length=94768 Score = 241 bits (266), Expect = 1e-58 Identities = 592/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 1614 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 1555 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || |||||||||| |||||| | || || | ||| |||| ||||||| | Sbjct 1554 GCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAAC 1495 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | || | || | || ||||| || || ||| | || ||||| || || ||| Sbjct 1494 CTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGAC 1435 Query 61234 GGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 || ||||| || ||||| | | |||| ||| | |||||||||||| |||||| Sbjct 1434 GGCATCGTGAACGAGAACCTGGCGATGAAC--TTCAGCAATGAGGTGCAAGTGCCGGAGG 1377 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 | || || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 1376 CTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGC 1317 Query 61352 TTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCG 61411 | || ||||| |||||||||| ||| | ||| || | ||| | |||||||| Sbjct 1316 TGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGTGCCATCG 1257 Query 61412 AGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG-ATCACC--AGTA 61468 ||||||| ||| ||| || ||| || ||||| |||| ||| | ||| || Sbjct 1256 AGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTG 1197 Query 61469 CAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || |||| || || ||||||| || || | || ||||| | || ||| Sbjct 1196 TTTCGTCCTAC----CCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTC 1141 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || || || | | ||||| ||| | ||||| || || || ||||| ||||||| | Sbjct 1140 TCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGC 1081 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTTG 61644 ||| || ||| | || || |||||||||||||| || || || || | || Sbjct 1080 TTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATG 1021 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || || | | ||||||| | | ||||| || ||| | ||| || ||| Sbjct 1020 -TACTCGA-----AGTTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGT 967 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || || || || || || ||| ||| | | ||||| || |||||| Sbjct 966 GACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGC 907 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| | || || |||| ||||| || || || || |||||||| ||| || | Sbjct 906 ATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCA 847 Query 61825 TTGGGT--ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 ||||| || | |||||| || ||| ||||| || || | ||||| ||||| | Sbjct 846 CTGGGTGCATCCA--AGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCT 789 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| || || ||||| || Sbjct 788 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397545895467680