Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq4175 96.9 3e-18 >seq4175 Length=1187 Score = 96.9 bits (106), Expect = 3e-18 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||| ||||| | ||| ||||||||||| || |||||| |||| Sbjct 297 GTTGAGCGACGGCCATTCCACAATGTACCGCCGGATCACTAGTCCCGACTTTCGTCCCTG 238 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||||| ||||||||| ||||||||| ||| ||| || |||| | | | ||| | Sbjct 237 CTCGAGCTGTCACTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCAACACCTGATTGC 178 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | || ||||| | || ||||||||| Sbjct 177 CGACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473578404284