Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933415.1_202017-01-04] 4,707 sequences; 39,189,079 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq124 87.8 7e-12 seq366 84.2 9e-11 >seq124 Length=50802 Score = 87.8 bits (96), Expect = 7e-12 Identities = 163/236 (69%), Gaps = 15/236 (6%) Strand=Plus/Plus Query 222472 CACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGGCC 222531 ||||| ||||||||| | |||| || | |||| | | | | || ||| || | Sbjct 6102 CACCGAGACCTCAAGAGCCCCAACTTGTTGGTGGACAAGAACTTTAACATTAAGTTGTCG 6161 Query 222532 GACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCC---ACCATGACACGG---TGCGGC 222585 |||||||| | || || |||||| | ||| |||||||| | |||||| Sbjct 6162 GACTTTGGCCTGGCCCGCGTCAAGG---CTCACGTGCAGACCATGACGGGCAACTGCGGC 6218 Query 222586 ACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACCGAGAAGGCC 222642 ||| | |||| ||| |||||| | | || ||| || ||||| ||||||||| Sbjct 6219 ACGGTCCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAG---TACACGGAGAAGGCC 6275 Query 222643 GACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCCTA 222698 ||||||| ||||||||| ||| |||| |||||| || |||||||| || |||| || Sbjct 6276 GACGTCTTCTCGTTCGGGATCGTCATCTGGGAGATCGTCACGGGCGAGTGTCCGTA 6331 Score = 86.0 bits (94), Expect = 3e-11 Identities = 125/173 (72%), Gaps = 13/173 (8%) Strand=Plus/Plus Query 122209 CATCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGGAGGAGAACGTC---ACCATGAC 122265 ||| ||| || | ||||||||| | |||| | |||||| | ||| |||||||| Sbjct 6149 CATTAAGTTGTCGGACTTTGGCCTGGCCCGCGTCAAGGCTCA---CGTGCAGACCATGAC 6205 Query 122266 CCGCGCC---GGCACGCCGTGC--TGGATGGCGCCCGAGATCATGCGAAACGAGAAGCAC 122320 || | |||||| || | ||||||||||||||| | || | ||| ||||| || Sbjct 6206 GGGCAACTGCGGCACG--GTCCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAGTAC 6263 Query 122321 GACGAGAAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTCAC 122373 ||||||| ||||||| |||||| || |||||| |||| |||||||||| Sbjct 6264 ACGGAGAAGGCCGACGTCTTCTCGTTCGGGATCGTCATCTGGGAGATCGTCAC 6316 >seq366 Length=28172 Score = 84.2 bits (92), Expect = 9e-11 Identities = 144/204 (71%), Gaps = 9/204 (4%) Strand=Plus/Minus Query 222466 ATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAG 222525 ||||||||||||||||||||||| |||| |||| | | | || ||| |||| Sbjct 20792 ATCATCCACCGCGACCTCAAGTCGCTCAACGTGCTGCTCGACAACCGGCTGCGTGCGAAG 20733 Query 222526 GTGGCCGACTTTGGGTTC--GCGCG-GATCAAGGAAACCAACGCCACCATGAC--ACGGT 222580 | |||||||||| || |||| | | || || ||| ||| ||||| |||| Sbjct 20732 CTCAGCGACTTTGGGCTCAGCCGCGAGCGCTCGG---CCGACGACACGATGACCAACGGC 20676 Query 222581 G-CGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAG 222639 | ||||||| | |||||||| ||||||||| | | ||| ||||| ||||||| Sbjct 20675 GTGGGCACGCTGCTGTGGACGGCGCCCGAGATCCTGCGCGGCGAGACCTACAGCGAGAAG 20616 Query 222640 GCCGACGTCTACTCGTTCGGCATC 222663 || ||||| ||||||| || |||| Sbjct 20615 GCGGACGTGTACTCGTACGCCATC 20592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084610406115186