Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq3136 172 1e-40 >seq3136 Length=1998 Score = 172 bits (190), Expect = 1e-40 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 32 CTGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCGGTCTCGGGTTTCCATGCGCTG 91 |||||||||||||||||| | ||||| || || || ||| | || || ||||| || ||| Sbjct 1962 CTGTTCCCGTTCCTGTTCGTGACCATCGCGTGCGGAGCGCTGTCCGGCTTCCACGCCCTG 1903 Query 92 ATCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGAGAGCCATGCCCGTTACATCGGT 151 ||| |||| || || || |||||| || ||| | ||| |||| || || | | | || Sbjct 1902 ATCGCCTCCGGAACGACCCCCAAGATGATCGAGAAGGAGCGCCAGGCGCGGTTCGTGGGC 1843 Query 152 TACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCATGGCGATGGTTGCCGCCTCGGTG 211 |||||||||||||| |||||||| |||||||||||||||||| | || ||||| | | Sbjct 1842 TACGGCGGCATGCTCATGGAGTCCTTCGTGGCCATCATGGCGCTCGTGGCCGCGGTGTCG 1783 Query 212 ATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 || || | |||| | ||||||||||||||| Sbjct 1782 ATCGACCGCGGCATCTACTTCGCCATGAAC 1753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161537529152