Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq2207 87.8 3e-15 >seq2207 Length=2883 Score = 87.8 bits (96), Expect = 3e-15 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTT 149 ||| | || | |||||| || | | ||| | ||||| |||||| ||||||||| || Sbjct 1110 AGCGCGGCCACGAAGGCCTCCTGGGGGACCT-CCACGCGGCCCACCATCTTCATGCGCTT 1168 Query 150 TTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCA 209 || || |||| |||||||| |||||||||||||| ||| | || ||||||||||| Sbjct 1169 CTTGCCCTCCTTCTGCTTCTCGAGCAGCTTGCGCTTGCGGGAGATATCGCCGCCGTAGCA 1228 Query 210 TTTGGCCAGTACGTTCTT 227 |||| || |||| ||| Sbjct 1229 CTTGGAGAGCACGTCCTT 1246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838354910848