Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3596 508 2e-141 seq1100 86.0 2e-14 >seq3596 Length=1666 Score = 508 bits (562), Expect = 2e-141 Identities = 393/460 (85%), Gaps = 13/460 (3%) Strand=Plus/Plus Query 85 CCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCC-GCGAAGGACC-- 141 ||||||||||||||||||||||| ||||| || || | ||| || || || | || Sbjct 1 CCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCGCCCGAGCAAAAGCCCAG 60 Query 142 --TTAACGCCAGAAAA-TG-GTCGGTGAAGAC---CAGTTCCG-CTTCATTGATTAAGTa 193 ||| | |||| || | | | || | | ||| | | | |||| | |||||| Sbjct 61 ACTTACATCTAGAACTGTGCGACCGCGAGGCCTCACAGATGCTACATCATGGTATAAGTA 120 Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253 ||| ||| | || ||||||||||||||| || | | | ||||||||||||||||| Sbjct 121 AAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTCCCACTTATTCTACA 178 Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 179 CCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 238 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 239 GCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAG 298 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 299 TGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTAC 358 Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 359 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTT 418 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||| ||||||| Sbjct 419 GACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 458 >seq1100 Length=8628 Score = 86.0 bits (94), Expect = 2e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 8628 CTTAGGACACCTGTGTTATCATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 8574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635112058944