Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq4782 114 3e-21 >seq4782 Length=1171 Score = 114 bits (126), Expect = 3e-21 Identities = 231/338 (68%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 37667 GACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAG-ACCGAACGGGCGTCGG 37725 ||| |||||| ||| || | || ||||| | || |||| | |||| || || ||| Sbjct 678 GACCTGCTGCGGGACGTCCTGGAGAACGG-GACGCCCAAGACGGACCGCACCGGGACCGG 620 Query 37726 CACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGA--TTTCCGCTC 37783 ||||||||||||||||| |||||| |||||| | || | || | || || || Sbjct 619 GACGCTGTCGGTGTTCGGGCGCCAGATCCGCTACGACCTC--AGCTCCTCCTTCCCCCTG 562 Query 37784 GTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAA 37843 |||| || || |||| |||||||| | || ||||| ||||| | Sbjct 561 CTGACCACCAAGCGTGTGCACTTCCGCTCCGTGGCGCTCGAGCTGCTGTGGTTCCTCTCC 502 Query 37844 GGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCG 37903 ||| | ||||| |||| |||||||| || |||| || ||||| ||||||||| Sbjct 501 GGCTCCTCCAACGTGCGCTGGCTGCAGGAGCGCGGGGTGAGCATCTGGGACGAGTGGGCG 442 Query 37904 GACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCA 37963 ||||| ||||| || || || ||| | ||||||| ||| |||||| ||| | | Sbjct 441 GACGAGAACGGGGACCTGGGTCCGGTGTACGGCGTGCAGTGGCGCAGCTGGCCCGCCGGG 382 Query 37964 GACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGA 38001 ||||| | || |||||||||||||| | || ||||| Sbjct 381 CACGGGGAGACGATCGACCAGATCGCGCGCGTGGTCGA 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130631656839700