Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_016654.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value seq939 221 3e-53 >seq939 Length=10641 Score = 221 bits (244), Expect = 3e-53 Identities = 251/337 (74%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 12175 GACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCG 12234 |||||| | ||||| | ||||| || ||| || |||||||| | || ||||||||| Sbjct 9518 GACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGCCG 9459 Query 12235 GCCGGTGCTGCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCAG 12294 |||| || ||||| |||||||||||||| |||||||| |||||| | |||||| |||| Sbjct 9458 TCCGGAGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGCAG 9399 Query 12295 GCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGGCC 12354 ||||||||||| ||| ||| | || |||||||||||| ||||||||||||||| Sbjct 9398 AGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGGCG 9339 Query 12355 GCCGAGAACGTCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGCTC 12414 ||||||||||| || ||| | | | |||| | || || |||||| ||| ||| Sbjct 9338 GCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCCTC 9279 Query 12415 AAGTCCCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGAGGTC 12474 ||| | ||| | | |||||| || |||||| || ||| || ||| ||||| || Sbjct 9278 AAGGCACGCTCGTACGAGACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAAGTG 9219 Query 12475 GACGAGATCGGCCCCAGCCTCCGCTACGCCACCGCCA 12511 ||||||||||||||| | | ||||| ||||||| Sbjct 9218 GACGAGATCGGCCCCTCCATGAAGTACGCGACCGCCA 9182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126187140701296