Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq120 86.0 3e-11 seq357 84.2 9e-11 >seq120 Length=50728 Score = 86.0 bits (94), Expect = 3e-11 Identities = 125/173 (72%), Gaps = 13/173 (8%) Strand=Plus/Plus Query 122209 CATCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGGAGGAGAACGTC---ACCATGAC 122265 ||| ||| || | ||||||||| | |||| | |||||| | ||| |||||||| Sbjct 6019 CATTAAGTTGTCAGACTTTGGCCTGGCCCGCGTCAAGGCTCA---CGTGCAGACCATGAC 6075 Query 122266 CCGCGCC---GGCACGCCGTGC--TGGATGGCGCCCGAGATCATGCGAAACGAGAAGCAC 122320 || | |||||| || | ||||||||||||||| | || | ||| ||||| || Sbjct 6076 GGGCAACTGCGGCACG--GTCCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAGTAC 6133 Query 122321 GACGAGAAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTCAC 122373 ||||||| ||||||| |||||| || |||||| |||| |||||||||| Sbjct 6134 ACGGAGAAGGCTGACGTCTTCTCGTTCGGGATCGTCATCTGGGAGATCGTCAC 6186 >seq357 Length=28175 Score = 84.2 bits (92), Expect = 9e-11 Identities = 144/204 (71%), Gaps = 9/204 (4%) Strand=Plus/Minus Query 222466 ATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAG 222525 ||||||||||||||||||||||| |||| |||| | | | || ||| |||| Sbjct 20795 ATCATCCACCGCGACCTCAAGTCGCTCAACGTGCTGCTCGACAACCGGCTGCGTGCGAAG 20736 Query 222526 GTGGCCGACTTTGGGTTC--GCGCG-GATCAAGGAAACCAACGCCACCATGAC--ACGGT 222580 | |||||||||| || |||| | | || || ||| ||| ||||| |||| Sbjct 20735 CTCAGCGACTTTGGGCTCAGCCGCGAGCGCTCGG---CCGACGACACGATGACCAACGGC 20679 Query 222581 G-CGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAG 222639 | ||||||| | |||||||| ||||||||| | | ||| ||||| ||||||| Sbjct 20678 GTGGGCACGCTGCTGTGGACGGCGCCCGAGATCCTGCGCGGCGAGACCTACAGCGAGAAG 20619 Query 222640 GCCGACGTCTACTCGTTCGGCATC 222663 || ||||| ||||||| || |||| Sbjct 20618 GCGGACGTGTACTCGTACGCCATC 20595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084592046077644