Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_031076.1 Length=38071 Score E Sequences producing significant alignments: (Bits) Value seq939 179 9e-41 >seq939 Length=10641 Score = 179 bits (198), Expect = 9e-41 Identities = 244/338 (72%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 34857 GCGAAACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATACCA 34916 |||| ||| ||||| | | || || || ||||| ||||||||||| || | || Sbjct 9520 GCGACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGC 9461 Query 34917 ATTCGGGCATTGCCGTCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCGGC 34976 || || ||||| |||||||||||||| || ||||| || ||| | |||||||||| Sbjct 9460 CGTCCGGAGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGC 9401 Query 34977 AAGCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGTCAGC 35036 | |||||| ||||| ||| || | || ||| ||| |||||||||||||||| || Sbjct 9400 AGAGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGG 9341 Query 35037 CGGCCGAGAACGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTCCAGGGACGTC 35096 |||||||||||||||| || || || ||||||||| || |||||||||||||| || | Sbjct 9340 CGGCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCC 9281 Query 35097 TCCGGGCGCGCAGCTACGACGACC-GCGACGGAAACCGTCGCACTGTGATCGGGATCGAA 35155 || ||| ||| ||||| |||| || || | || ||||| | || | | ||| Sbjct 9280 TCAAGGCACGCTCGTACGA-GACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAA 9222 Query 35156 GTCGATGACGTGGGCCCGGCGTTGAAGTTTGCCACCGC 35193 || || || | ||||| | |||||| || ||||| Sbjct 9221 GTGGACGAGATCGGCCCCTCCATGAAGTACGCGACCGC 9184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121697827423988