Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933465.1_202017-01-04] 5,378 sequences; 40,428,501 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq2697 284 3e-72 seq939 179 9e-41 >seq2697 Length=2403 Score = 284 bits (314), Expect = 3e-72 Identities = 248/312 (79%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 8821 GGCTCATCCCAATCGGGGGTGTAGGAGTTGGGGTCTGAAGCCGCCGGTCTCGAGCAGGCT 8880 ||||||||||| ||| |||||||| | ||||||||| |||||||||||||||||||| Sbjct 311 GGCTCATCCCAGTCGAGGGTGTAGACG---GGGTCTGAACCCGCCGGTCTCGAGCAGGCT 255 Query 8881 TCGGGCGATGTAGTTGGTCAGGTTGCGGAACCCGAGTGCGGAGCCGCGCAGGTGTTCGAG 8940 | ||||||||||||||| |||||||||||||| || || |||||| ||||||||||| Sbjct 254 CCTGGCGATGTAGTTGGTGAGGTTGCGGAACCCAAGAGCACTGCCGCGGAGGTGTTCGAG 195 Query 8941 CCGTCCGTTGAGCGCCTCGGTCGGCCCGTTGCTGGTGCCGGGTCGTTCGAAGTAGGCGAG 9000 || ||||||| |||||||||||| |||||| |||||||| || |||||||||||||| Sbjct 194 GCGGCCGTTGATCGCCTCGGTCGGACCGTTGGACGTGCCGGGGCGGTCGAAGTAGGCGAG 135 Query 9001 CACGTCAGCGGCTCGCTTCTTCAGGGTCCGGCCCAGGGTGGTGAGCTCGGTGAGCACCTT 9060 |||||| |||| |||||| |||| |||||||| || |||||||| ||| ||| || | Sbjct 134 CACGTCGTCGGCGCGCTTCCTCAGCGTCCGGCCGAGTGTGGTGAGTTCGACCAGCGCCCT 75 Query 9061 GGGGACGCCGGCGCTNNNNNNNNNNNNNAGCTTCTCCATGAGCTCGCGGCCACGTTGCCG 9120 ||||| ||| ||| || || |||||||||||||||| | || || Sbjct 74 CGGGACACCGCTGCTGATCGAGGCAATCAGGTTGGCCATGAGCTCGCGGCCGTGGTGGCG 15 Query 9121 GTCCTCGTGGCG 9132 ||| |||||||| Sbjct 14 GTCTTCGTGGCG 3 >seq939 Length=10641 Score = 179 bits (198), Expect = 9e-41 Identities = 244/338 (72%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 36426 GCGAAACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATACCA 36485 |||| ||| ||||| | | || || || ||||| ||||||||||| || | || Sbjct 9520 GCGACACCGTCATCACAGTGATCGGAAATCTGACCGCAGACCCCGAACTTCGCTTCACGC 9461 Query 36486 ATTCGGGCATTGCCGTCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCGGC 36545 || || ||||| |||||||||||||| || ||||| || ||| | |||||||||| Sbjct 9460 CGTCCGGAGCCGCCGTGGCCAACTTCACCGTTGCGTCCACCCCGCGCGCCTTCGACCGGC 9401 Query 36546 AAGCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGTCAGC 36605 | |||||| ||||| ||| || | || ||| ||| |||||||||||||||| || Sbjct 9400 AGAGCAACGAGTGGAAAGACCAGGAAACTCTTTTCATGCGCTGCTCGGTGTGGCGTGAGG 9341 Query 36606 CGGCCGAGAACGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTCCAGGGACGTC 36665 |||||||||||||||| || || || ||||||||| || |||||||||||||| || | Sbjct 9340 CGGCCGAGAACGTGGCGGAGTCCCTCACCAAGGGCACCCGCGTGATCGTCCAGGGCCGCC 9281 Query 36666 TCCGGGCGCGCAGCTACGACGACC-GCGACGGAAACCGTCGCACTGTGATCGGGATCGAA 36724 || ||| ||| ||||| |||| || || | || ||||| | || | | ||| Sbjct 9280 TCAAGGCACGCTCGTACGA-GACCAAGGAAGGGGAGCGCCGCACCAGCACCGAGCTGGAA 9222 Query 36725 GTCGATGACGTGGGCCCGGCGTTGAAGTTTGCCACCGC 36762 || || || | ||||| | |||||| || ||||| Sbjct 9221 GTGGACGAGATCGGCCCCTCCATGAAGTACGCGACCGC 9184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126718306776872