Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq923 224 3e-56 >seq923 Length=10729 Score = 224 bits (248), Expect = 3e-56 Identities = 182/218 (83%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCAT 347 || ||||||| ||||||||||| | ||| |||| ||| ||| || |||| Sbjct 10324 GCATTGGTTTCA-ATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTGATGCAT 10382 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| |||| |||||| |||||||||||||||| | | || ||| Sbjct 10383 GTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTGGACTATA 10442 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCA 466 |||||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||| Sbjct 10443 ACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCA 10502 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| ||||||||||||||| Sbjct 10503 TGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 10540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510330340352