Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933485.1_202017-01-04] 4,612 sequences; 39,213,553 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq191 259 4e-64 seq19 241 1e-58 >seq191 Length=41755 Score = 259 bits (286), Expect = 4e-64 Identities = 1072/1661 (65%), Gaps = 55/1661 (3%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || ||||| ||||| || | | | || Sbjct 19219 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACG-TCAGCTT 19277 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || |||| |||| ||||| | || || |||| |||||| ||||| ||||| | Sbjct 19278 GC-TAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGC 19336 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTA 65298 |||| || || | || ||| | | ||| | | | | | |||||||| || |||||||| Sbjct 19337 CACGGTCCGCCGACAGGTCCA--ACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTA 19394 Query 65299 CAGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GC 65355 | | | | |||| ||||| | | | ||| || || |||| ||| || Sbjct 19395 CTT-CTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCAC--CGTCAGC 19451 Query 65356 AATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAA 65415 | ||| | || |||| | | ||| | |||| ||||| || | | | | Sbjct 19452 CAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAG 19511 Query 65416 GTGACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || || ||| | || | | |||||| || | ||| || || ||| || ||||| || Sbjct 19512 GT-AC--TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGA 19568 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 |||| || || | ||| ||| ||||||| | ||| || || || || ||||| ||||| Sbjct 19569 CGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCAT 19628 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 ||||| || | | ||||| || | |||| | | | ||| | | | | Sbjct 19629 CGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGC 19688 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652 ||| | ||||| | | || | ||| |||||| || || | | | || Sbjct 19689 CCAATCCCACAAGCCCGAA--GACGGGGTG-ACGCCCCACATGTCGAACTGGAAGATACC 19745 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 | ||||| || || || |||| | |||||| ||| ||||||||| | | || Sbjct 19746 CTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CA 19804 Query 65713 GCT-GGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTG 65771 | |||||| | | || | || || |||||||| ||| || |||||||| | Sbjct 19805 TCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGG 19864 Query 65772 CCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACT 65830 | | ||||||| ||| |||| ||| |||| ||| | || || ||||| || || Sbjct 19865 CTTGCGGGCTCTCGAACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACG 19923 Query 65831 CCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAA 65890 |||||||| | || || || |||| ||||| | |||||| || |||||||| Sbjct 19924 CCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTAG 19983 Query 65891 TTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGT 65950 |||| || || | ||||| || || |||||||| | | || ||| | | Sbjct 19984 TTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTG--GTCACCTCGTACAGCT 20041 Query 65951 TCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCA 66010 || || | | || | | | || | ||||||||||||| ||||| Sbjct 20042 TC----------TGGTA--GTTGAAC---ACT-CCATCCTCCACAAACTTGGGGAGGGCC 20085 Query 66011 AGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTG 66070 | ||| || |||||||| || || | ||| || || | || ||||| | ||| ||| | Sbjct 20086 ACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAG 20145 Query 66071 CACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCA 66130 |||| || || |||| || ||||| | ||||| || || |||||| ||| || Sbjct 20146 CACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCG 20205 Query 66131 TCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAA 66190 |||||||||| |||| |||| ||| ||||||| || | || | ||||||| ||| Sbjct 20206 TCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCAC 20265 Query 66191 AGAGCGCGTGCCTTCACCGTA---CGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTA 66246 || | || || | ||| || | ||||| |||| ||||| | ||||| Sbjct 20266 AGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTC----TCGTACTTCTCGTA 20321 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 || ||||| || ||||| ||| | || | || || | || || | Sbjct 20322 CAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAA 20381 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 || ||| | || | | ||| ||||| ||| || ||||| || | ||| || || Sbjct 20382 AAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGC 20441 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 ||||||||| ||||| || || ||| ||| ||||||| || ||||||| || ||||| Sbjct 20442 GTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAA 20501 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 ||| || | ||| || ||||| || ||||||||||||||||||||||| | || ||||| Sbjct 20502 CTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCC 20561 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 || || ||||| || ||||| || | |||||||| | || ||| || | || ||| Sbjct 20562 TCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCC 20621 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACAT 66605 ||| ||| || || |||||| ||| | | | |||| || || || | ||| | Sbjct 20622 GTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTCGTGGCGCGGATGTTGTGCATGC 20680 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATA 66665 | | |||||||| |||||| ||| |||||| || || | | || | | | Sbjct 20681 TAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAA 20740 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725 |||| ||||| ||||| ||| |||| ||| ||| | || || || || || | Sbjct 20741 TGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCG 20800 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 | ||| |||| ||||| ||||| || |||||||||||| Sbjct 20801 GCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAG 20841 >seq19 Length=94326 Score = 241 bits (266), Expect = 1e-58 Identities = 592/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 1113 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 1054 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || |||||||||| |||||| | || || | ||| |||| ||||||| | Sbjct 1053 GCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAAC 994 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | || | || | || ||||| || || ||| | || ||||| || || ||| Sbjct 993 CTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGAC 934 Query 61234 GGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 || ||||| || ||||| | | |||| ||| | |||||||||||| |||||| Sbjct 933 GGCATCGTGAACGAGAACCTGGCGATGAAC--TTCAGCAATGAGGTGCAAGTGCCGGAGG 876 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 | || || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 875 CTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGC 816 Query 61352 TTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCG 61411 | || ||||| |||||||||| ||| | ||| || | ||| | |||||||| Sbjct 815 TGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGTGCCATCG 756 Query 61412 AGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG-ATCACC--AGTA 61468 ||||||| ||| ||| || ||| || ||||| |||| ||| | ||| || Sbjct 755 AGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTG 696 Query 61469 CAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || |||| || || ||||||| || || | || ||||| | || ||| Sbjct 695 TTTCGTCCTAC----CCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTC 640 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || || || | | ||||| ||| | ||||| || || || ||||| ||||||| | Sbjct 639 TCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGC 580 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTTG 61644 ||| || ||| | || || |||||||||||||| || || || || | || Sbjct 579 TTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATG 520 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || || | | ||||||| | | ||||| || ||| | ||| || ||| Sbjct 519 -TACTCGA-----AGTTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGT 466 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || || || || || || ||| ||| | | ||||| || |||||| Sbjct 465 GACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGC 406 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| | || || |||| ||||| || || || || |||||||| ||| || | Sbjct 405 ATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCA 346 Query 61825 TTGGGT--ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 ||||| || | |||||| || ||| ||||| || || | ||||| ||||| | Sbjct 345 CTGGGTGCATCCA--AGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCT 288 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| || || ||||| || Sbjct 287 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397545653199680