Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1694 154 3e-35 >seq1694 Length=4589 Score = 154 bits (170), Expect = 3e-35 Identities = 243/339 (72%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| || ||||| | || ||||| Sbjct 3149 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTTTGCTTACAAACCGTTGGAGCA 3207 Query 61 G--AGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | | | | ||||| |||||||||||| | ||||||||| |||||||| || || Sbjct 3208 GCCATAGCAGCTGTGACAGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAG-CGATACGT 3266 Query 119 G-CGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC 177 | ||||||||| | | | |||||| || ||||||||| || || ||||||| Sbjct 3267 GGCGAGGTTAACC----CGAGTGGGGTAGCCGTAGCGAAAGCGAGTCTGAATAGGGCGAT 3322 Query 178 G-AGTTG-GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGC 235 ||| | ||| | |||||| |||| | |||||||| ||| | |||| ||||| | Sbjct 3323 TCAGTCGCGTGTC-CTAGACCCGAAGCGAAGTGATCTATCCATGGCCAGGCTGAAGCGAC 3381 Query 236 GGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGG 295 ||||| ||| |||||| ||||||| | |||||||| | |||||| | || Sbjct 3382 GGTAAGACGTCGTGGAGGGCCGAACCCACTTAGGTTGAAAACTGAGGGGATGAGCTGTGG 3441 Query 296 GTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||||||| | |||||| || Sbjct 3442 ATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGT 3480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972742030848