Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq923 228 1e-57 >seq923 Length=10928 Score = 228 bits (252), Expect = 1e-57 Identities = 203/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 1800 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 1741 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 1740 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 1682 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 1681 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 1622 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 1621 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 1563 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 1562 AAGTTAGGGG 1553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915145463232