Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1694 333 7e-89 >seq1694 Length=4589 Score = 333 bits (368), Expect = 7e-89 Identities = 326/414 (79%), Gaps = 11/414 (3%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 1136 TACCTGCAGAAAAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGCGC 1195 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGT-AAGACAGGTG 121 |||||||| |||||||| ||||||||||| | || |||||||| ||| | | | || Sbjct 1196 AAGCGTTATCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGTT-TGTCGCGTCTGCTG 1254 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||| ||| |||| ||||| || |||| | | || | |||||||||| | || Sbjct 1255 TGAAAACCCGAGGCTCAACCTCGGGCCTGCAGTGGGTACGGGCAGACTAGAGTGCGGTAG 1314 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || | ||||||||| ||||||| ||| |||||| |||||| ||||||||||| ||| Sbjct 1315 GGGAGATTGGAATTCCTGGTGTAGCGGTGGAATGCGCAGATATCAGGAGGAACACCGATG 1374 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||||| | ||||| ||||||||| | | |||||| |||||||||||||| Sbjct 1375 GCGAAGGCAGATCTCTGGGCCGTAACTGACGCTGAGGAGCGAAAGGGTGGGGAGCAAACA 1434 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG--GATT- 358 || ||||||||||||||||||||| || |||||| | |||||||||| ||| ||| Sbjct 1435 GGCTTAGATACCCTGGTAGTCCACCCCGTAAACGTTGGGAACTAGTTGTGGGGTCCATTC 1494 Query 359 TAC---TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || |||| || ||| ||||||||| | ||||| ||||||||||| ||| Sbjct 1495 CACGGATTCC---GTGACGCAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTAC 1545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289523152736