Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1694 178 2e-42 >seq1694 Length=4589 Score = 178 bits (196), Expect = 2e-42 Identities = 157/196 (80%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 57 GCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAG 116 |||||||||||||||||||||||||||||||| ||| ||| |||||||| || ||| | Sbjct 4589 GCACGGACCTGTGTTTTTAGTAAACAGTCGCTACCCACTAGTCTCTGCGGCCCCCAAACG 4530 Query 117 CTC----AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATT 172 || | || ||| | | | ||| ||||||||||||||||||||||| ||| Sbjct 4529 CTTTCGGAGCAAGTCCTAGTACGTCGAAGGCCCCCCTTCTCCCGAAGTTACGGGGGTATT 4470 Query 173 TTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCT 232 ||||||| |||||||||||| ||| | ||| | |||| ||||||||||||||||||||| Sbjct 4469 TTGCCGAGTTCCTTAACCACGATTCTCTCGATCCCCTTGGTATTCTCTACCTGACCACCT 4410 Query 233 GTGTCGGTTTACGGTA 248 | |||||||| |||| Sbjct 4409 GAGTCGGTTTGGGGTA 4394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694359913807