Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1694 466 5e-129 >seq1694 Length=4589 Score = 466 bits (516), Expect = 5e-129 Identities = 410/502 (82%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1543 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGCGGAGCAT 1602 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCT-GACCCCT 119 | || ||||||||| |||||||||||||||||||||| |||||||| | || | Sbjct 1603 GCGGATTAATTCGATGCAACGCGAAGAACCTTACCAAGGCTTGACATATACGAGAACGGG 1662 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGA-GTGA-CAGGTGATGCATGGTTGTCGT 177 | ||| || ||| | ||| || ||| || | |||||| |||||||||||||| Sbjct 1663 CCAGAAAT---GGTCAACTCTTTGG---ACACTCGTAAACAGGTGGTGCATGGTTGTCGT 1716 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 |||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1717 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTTCTATGT 1776 Query 238 TGCCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 ||||| || ||| | |||| |||| | |||||||| | ||| |||||||||||| Sbjct 1777 TGCCAGCACGTAATGGTGGGAACTCATGGGATACTGCCGGGGTCAACTCGGAGGAAGGTG 1836 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 |||| |||||||||||||||||||||||||| ||||||| ||| | ||||||||||| | Sbjct 1837 GGGATGACGTCAAATCATCATGCCCCTTATGTCTTGGGCTTCACGCATGCTACAATGGCC 1896 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||||||||| || | ||||| |||| ||| ||||||| |||| | || ||||||| Sbjct 1897 GGTACAAAGGGCTGCAATACCGCAAGGTGGAGCGAATCCCAAAAAGCCGGTCCCAGTTCG 1956 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-A 474 ||||| |||||||||||||| |||||| ||| ||||||||||||| |||||||| | Sbjct 1957 GATTGAGGTCTGCAACTCGACCTCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAA 2016 Query 475 TGCTACGGTGAATACGTTCCCG 496 ||| ||||||||||||||||| Sbjct 2017 CGCTGCGGTGAATACGTTCCCG 2038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503910376640