Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1694 230 5e-58 >seq1694 Length=4589 Score = 230 bits (254), Expect = 5e-58 Identities = 284/379 (75%), Gaps = 26/379 (7%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| ||| ||| |||||||||||||||| Sbjct 1102 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTTG-CTGCATCAGGCTTTCGCCCA 1045 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1044 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 985 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| ||| |||||||||||||||||||||||| Sbjct 984 GTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGACGCCTTGGTGAGCCATTACCTCAC 925 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTC---CC--CT 236 |||| |||| || | | || ||| | || ||||| || || || Sbjct 924 CAACAAGCTGATAGGCCGCGAGCCCAT---------CCCGGACCGAAATTCTTTCCAGCT 874 Query 237 GCT-----TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCC 291 ||| | | || || ||||| |||||||||| | |||||| |||||||| Sbjct 873 GCTGAAGATGCCTTCGCAGCTCGTATCCGGTATTAGCAGCTGTTTCCAGCTGTTATCCCA 814 Query 292 CACTACCAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCT-CTCAAGAGAAGCAA 349 | | | ||||| || || | | |||||||||||| |||| || || |||| ||||| Sbjct 813 GAGTCCGGGGCAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTGATCCAGAG-AGCAA 755 Query 350 GCT-TCTCTCTACCGCTCG 367 ||| ||| || |||| ||| Sbjct 754 GCTCTCTTTC-ACCGTTCG 737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071936119520