Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1694 724 0.0 >seq1694 Length=4589 Score = 724 bits (802), Expect = 0.0 Identities = 523/601 (87%), Gaps = 15/601 (2%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||| | |||||| |||||| ||||||||| || |||||||||||| |||||||||| Sbjct 3643 TCGACTATGAAGCTTA-TCCCCCACAGTCTCACTGCTGCGCTCTCACTTACCGGCATTCG 3585 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||||| ||| || |||| ||||| || ||| | | ||||||||| ||||||||||| Sbjct 3584 GAGTTTGGCTGACGTCAGTAACCTTGTAGGGCCCATCGGCCATCCAGTAGCTCTACCTCC 3525 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3524 GGCAAGAAACACGCAACGCTGCACCTAAATGCATTTCGGAGAGAACCAGCTATCACGAAG 3465 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3464 TTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCTCAGTTTTCAACCTAAGTGGGT 3405 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||| |||||||| |||||||| ||||||| |||| |||||||||||||||||||||| Sbjct 3404 TCGGCCCTCCACGACGTCTTACCGTCGCTTCAGCCTGGCCATGGATAGATCACTTCGCTT 3345 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | || ||| | |||||||||| ||||||||||||||||||||||||| Sbjct 3344 CGGGTCTAGGACACGCGACTGAATCGCCCTATTCAGACTCGCTTTCGCTACGGCTACCCC 3285 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 || |||||||||||||| || | ||| ||||||||||||||||||||||||||||||| Sbjct 3284 ACTCGGGTTAACCTCGCCACGTATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCT 3225 Query 420 GTCAC--CTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAG 477 ||||| ||| || ||| ||||| |||| ||||| ||| | |||||||| Sbjct 3224 GTCACAGCTGCTAT------GGCT-----GCTCCAACGGTTTGTAAGCAAACGGTTTCAG 3176 Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 3175 GTACTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 3116 Query 538 ATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTT 597 |||||||| | |||||||||||||||| | |||||||| | |||||||||||| |||| Sbjct 3115 ATCGGTCATCTGGGAGTATTTAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTT 3056 Query 598 C 598 | Sbjct 3055 C 3055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817491689216