Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1694 210 5e-52 >seq1694 Length=4589 Score = 210 bits (232), Expect = 5e-52 Identities = 307/418 (73%), Gaps = 12/418 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || | |||| |||| ||| ||||||| |||||| | Sbjct 3446 CCTATCCACAGCTCATCCC-CTCAGTTTT-CAACCTAAGTGGGTTCGGCCCTCCACGACG 3389 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||| || |||| |||| ||||||||| | | || |||||||| | Sbjct 3388 TC-TTACCGTCGCTT-CAGCCTGGCCAT-GGATAGATCACTTCGCTT-CGGGTCTAGGAC 3333 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 | |||||| | ||||||| | ||||||||||| ||||||| || ||| | |||| | | Sbjct 3332 AC-GCGACTGAATCGCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCACTCGGGTTA 3275 Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC-CAA 240 | | ||||| | ||| |||| | | |||| | ||||||| |||| ||||| | Sbjct 3274 ACCTCGCCACGTATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACAGCTG 3215 Query 241 CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 | | | ||||| || | ||||| ||| ||||||||||| |||||||||||||||| | Sbjct 3214 CTATGGCTGCTCCAACGGTTTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTC-C 3156 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||| |||||| |||||||||||||||||| || | |||||||||| | |||||| Sbjct 3155 CGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCATCTGGGAGTATT 3096 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||| ||| | |||||| || ||||| || ||||||| || |||| ||||| Sbjct 3095 TAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTTCTCGGGCCCCGTGCTACT 3038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241526013056