Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1694 268 2e-69 >seq1694 Length=4589 Score = 268 bits (296), Expect = 2e-69 Identities = 246/306 (80%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1071 GGCGTTGCTGCATCAGGCTTTCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 1012 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||| | Sbjct 1011 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 952 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 || || ||||||| || |||| ||||||||| | || || ||||||||||||||| | Sbjct 951 CGACGCCTTGGTGAGCCATTACCTCACCAACAAGCTGATAGGCCGCGAGCCCATCCCGGA 892 Query 181 GCGATAAATCTTT--GGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238 ||| || ||||| | ||| |||||| | | | | ||| |||||||||| Sbjct 891 CCGA-AATTCTTTCCAGCTGCTGAA-GATGCC-TTCGCAGCTCGTATCCGGTATTAGCAG 835 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 ||||||| ||||| ||| | ||||||||||||||||||||||||||||| | Sbjct 834 CTGTTTCCAGCTGTTATCCCAGAGTCCGGGGCAGGTTGCTCACGTGTTACTCACCCGTTC 775 Query 299 GCCACT 304 |||||| Sbjct 774 GCCACT 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998340505344