Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1694 370 2e-100 >seq1694 Length=4589 Score = 370 bits (410), Expect = 2e-100 Identities = 337/430 (78%), Gaps = 31/430 (7%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| |||||||| ||| | ||||||| Sbjct 4069 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGAAGATTAGCTTGACC 4010 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| | |||| ||||| | ||| ||| |||| ||||||||||||||| Sbjct 4009 CTGGAACCCTTGGTCATTCGGGGGACGTGTTTCTCACACGTCTTTCGCTACTCATGCCTG 3950 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||| | |||||| | |||| | || ||||| | ||||||| Sbjct 3949 CATTCTCACTCGTGTAGCCTCCACGGCTGGTTCACACCGCCGCTTCGCTGGCCACACGAC 3890 Query 181 GCTCCCCTACCCAACCACACAGGT-----------------------------TGCCACA 211 |||| |||||||| | |||| | | ||||||| Sbjct 3889 GCTCTCCTACCCATCAACACGGCTGGACCACGAAGGCCTACCAATAATGTCAATGCCACA 3830 Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 |||||| || ||| ||||||| |||||| ||||||||||||||||||||||||||| Sbjct 3829 ACTTCGGTGGCGTGCTTGAGCCCCGTTACATTGTCGGCGCGGAATCACTTGACCAGTGAG 3770 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| Sbjct 3769 CTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTGAGCAA 3710 Query 332 CTCCACATCCTTTCCCACTGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGT 390 ||||||||||||||||||| || ||| | ||||||| |||||| || || |||||| ||| Sbjct 3709 CTCCACATCCTTTCCCACTTAG-CACGCGCTTAGGGACCTTAGTTGGTGGTCTGGGTTGT 3651 Query 391 TTCCCTCTCG 400 |||||||||| Sbjct 3650 TTCCCTCTCG 3641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177529826816