Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq5091 122 1e-25 >seq5091 Length=1189 Score = 122 bits (134), Expect = 1e-25 Identities = 154/210 (73%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 89 GAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTT 148 |||| | || | |||||| || | | || | || ||| |||||| ||||||||| | Sbjct 265 GAGCGCGGCGATGAAGGCCTCCT-GCGGCACCTCGACGCGGCCCACCATCTTCATGCGCT 323 Query 149 TTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGC 208 | || || |||| |||||||| ||||| |||||||| ||| | | |||||||||||||| Sbjct 324 TCTTGCCTTCCTTCTGCTTCTCGAGCAGTTTGCGCTTGCGGGTGATGTCACCGCCGTAGC 383 Query 209 ATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGT----CCGCGCAATGATCTGC 264 | |||||||| |||| ||| | || || |||| || ||||| |||||| | Sbjct 384 ACTTGGCCAGCACGTCCTTACGGATGGC----GCGGATGTTCTCGCGCGCGATGATCCGG 439 Query 265 CCGCCAATGGCGGCCTGGATCGCGACGTCG 294 |||| || ||||||||||||| || ||| Sbjct 440 GCGCCGATCGCGGCCTGGATCGGCACCTCG 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838350039744