Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1694 253 5e-65 >seq1694 Length=4589 Score = 253 bits (280), Expect = 5e-65 Identities = 317/423 (75%), Gaps = 30/423 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | |||||||||||||| |||||||| Sbjct 1102 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTTGCTGCATCAGGCTTTCGCCCATT 1043 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1042 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 983 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| ||||| |||||||| || |||| ||| ||||| |||| ||||||||| | ||| Sbjct 982 GGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGACGCCTTGGTGAGCCATTACCTCACCA 923 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTC--CCCCTCT-T 241 || |||| || | | ||||| || ||||| || || || Sbjct 922 ACAAGCTGATAGGCCGCGAGCCCATCC---------CGGACCGAAATTCTTTCCAGCTGC 872 Query 242 TG-----GTCTT-GC-GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCC--C 292 || | ||| || | ||| |||||||||| | |||||||| |||||||| Sbjct 871 TGAAGATGCCTTCGCAGCTCGTATCCGGTATTAGCAGCTGTTTCCAGCTGTTATCCCAGA 812 Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351 ||| |||| ||| | || |||||||||||| ||||||| || | || ||| Sbjct 811 GTCC--GGGGCAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTGATC--CAGAG-AGC 757 Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 ||||| || || | |||||||||||||||||||||| || |||||||||||||| || Sbjct 756 AAGCT-CT--CTTTCACCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCATCCT 700 Query 412 GAG 414 ||| Sbjct 699 GAG 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222327157184