Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1694 407 4e-111 >seq1694 Length=4589 Score = 407 bits (450), Expect = 4e-111 Identities = 379/476 (80%), Gaps = 9/476 (2%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 || |||| ||||||||||||| |||| | ||||||||| | || | |||||||| | Sbjct 769 AGTGGCGAACGGGTGAGTAACACGTGAGCAACCTGCCCCGGACTCTGGGATAACAGCTGG 828 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGT-AGAAGTATCAAAGCTCC 141 ||| ||||||||| |||| | || | |||| | || || |||| Sbjct 829 AAACAGCTGCTAATACCGGATACGAG-CTGCGAAGGCATCTTCAGCAGCTGGAAAGAATT 887 Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201 |||| | |||| | | |||| | || |||| |||||| |||||| |||| ||||||| Sbjct 888 T-CGGTCCGGGATGGGCTCGCGGCCTATCAGCTTGTTGGTGAGGTAATGGCTCACCAAGG 946 Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261 || ||| ||||||| ||||||||||||| |||||||| ||| |||||||||||| ||| Sbjct 947 CGTCGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGACTGAGACACGGCCCA 1006 Query 262 AACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCA 321 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1007 GACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCA 1066 Query 322 ACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAA-----GA 376 |||||||||||| ||||| ||||||||||| ||||| |||| | || |||| || Sbjct 1067 ACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTTAGCAGGGAAGAAGCGA 1126 Query 377 TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 | ||||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct 1127 AAGTGACGGTACCTGCAGAAAAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 1186 Query 437 GTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||||| || ||||||||||||||||| | |||||||||| | |||||| ||||| Sbjct 1187 GTAGGGCGCAAGCGTTATCCGGAATTA-TTGGGCGTAAAGAGCTCGTAGGCGGTTT 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497510758016