Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1694 259 2e-66 >seq1694 Length=4589 Score = 259 bits (286), Expect = 2e-66 Identities = 403/562 (72%), Gaps = 22/562 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||||||| | |||||||||| | |||||||||| ||| Sbjct 3304 CGAGTCTGAATAGGGCGATTCAGTCGCGTGTCCTAGACCCGAAGCGAAGTGATCTATCCA 3363 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| |||||| ||| | |||||| ||||||||||| | |||||||| Sbjct 3364 TGGCCAGGCTGAAGCGACGGTAAGACGTCGTGGAGGGCCGAACCCACTTAGGTTGAAAAC 3423 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||||||||||||| |||||||||||||| || ||||||| | |||||||||||| Sbjct 3424 TGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCT 3483 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC-CATCGGGGGTAGAGC-ACTGTTA 237 |||||||| |||||||| || | || | | ||| |||||||| |||| | Sbjct 3484 CTCCGAAATGCATTTAGGTGCAGCGTTGCGTGTTTCTTGCCGGAGGTAGAGCTACTG-GA 3542 Query 238 TGG-CTAGGGG---GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAG 293 ||| | | ||| || | ||| || | | |||||||||||||| | || Sbjct 3543 TGGCCGATGGGCCCTACAAGGTTACTGACGTCAGC----CAAACTCCGAATGCCGGTAAG 3598 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 | | ||| | |||||| |||| | |||| | | | ||||||| || || || Sbjct 3599 TGAGAGCGCAGCAGTGAGACTGTGGGGGATAAGCTTCATAGTCGAGAGGGAAACAACCCA 3658 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 ||| | || |||||| ||| || | ||||||| | || || || ||||| | Sbjct 3659 GACCACCAACTAAGGTCCCTAAGCGCGTGCTAAGTGGGA--AAGGATGTGGAGTTGCTCA 3716 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||| | |||| |||||||| |||||||||| | || ||||||||||||| |||||||| Sbjct 3717 GACAACCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACT 3775 Query 474 AGTCGAG-GAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGG 531 ||| || || || ||| || ||| | |||| | ||| | ||||||| |||| Sbjct 3776 GGTCAAGTGATTC-CGCGCCGACAATGTAACGGGGCTCAAGCACGCCACCGAAGTTGTGG 3834 Query 532 GATCATTTATATGATCGGTAGG 553 |||| | || || |||||| Sbjct 3835 ---CATTGACATTATTGGTAGG 3853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689499316736