Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1694 150 3e-34 >seq1694 Length=4589 Score = 150 bits (166), Expect = 3e-34 Identities = 185/252 (73%), Gaps = 13/252 (5%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | || ||| ||||||||||| | ||||||| Sbjct 2595 AGAGCAAACGGTGGATGCCTTGGCATCTGGAGCCGAAGAAGGACGTAGCAATCTGCGATA 2654 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC--- 117 ||| ||||||||| || |||||||||||||| ||| ||||||||||||||||| Sbjct 2655 AGCCTCGGGGAGTGGATAAGCACACTTTGATCCGAGGATCTCCGAATGGGGAAACCCCGC 2714 Query 118 --GGCCCTTTG-------GGTCATTGCATGCTGAATACATA-GGTATGCAAAGCGAACGC 167 ||| || || | | | ||||||| ||| || | | || ||||| Sbjct 2715 TGGGCGGCGTGCCGACCCAGTGACTCCCGCCTGAATATATAGGGCGGGTAGAGGGAACGT 2774 Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 || ||| |||||||||| |||| | |||||| ||||| |||||| |||||| ||||| Sbjct 2775 GGGGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAGCAACCGCGATTCCGTTAGTAG 2834 Query 228 TGGCGAGCGAAA 239 |||||||||||| Sbjct 2835 TGGCGAGCGAAA 2846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918345272544