Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1694 158 3e-36 >seq1694 Length=4589 Score = 158 bits (174), Expect = 3e-36 Identities = 211/295 (72%), Gaps = 15/295 (5%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||| ||| |||||| || || | Sbjct 1176 GGCTGCTGGCACGTAGTTAGCCGGCGCTTTTTCTGCAGGTACCGTCACTTTCGC------ 1123 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || |||||| ||||||| |||||||| ||| || || |||||| |||||| Sbjct 1122 --------TTCTTCCCTGCTAAAAGAGGTTTACAACCCGAAGG-CCGTCATCCCTCACGC 1072 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | |||| |||| || ||| |||||| ||||||||| |||||||||||||||||| Sbjct 1071 GGCGTTGCTGCATCAGGCTTTCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 1012 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| | | |||||||| | ||| || | Sbjct 1011 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 952 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 || | || |||| ||| ||||| | || || | || || | ||| |||||| Sbjct 951 CGACGCCTTGGTGAGCCATTACCTCACCAACAAGCTGATAGGCCGCGAGCCCATC 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068736310208