Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq8183 93.3 6e-17 seq5985 80.6 4e-13 >seq8183 Length=1018 Score = 93.3 bits (102), Expect = 6e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| || Sbjct 189 CATCAGTGTAGTGCGCGTGCGGCTCAGAACGTCTAAGGGCATCACAGACCTGTTATTTCC 130 Query 219 T 219 | Sbjct 129 T 129 >seq5985 Length=2543 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69 ||||||||||| |||| || ||| |||||| | | | |||||||||| ||||||||| || Sbjct 829 GCAGGGACGTAATCAATGCAAGC-TGATGAGTTGGGTTTACTAGGAA-TTCCTCGTTCAA 886 Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATG 105 ||| | |||||||| |||||||| | ||| ||| Sbjct 887 GACTGAAAATTGCAACATTCTATCCCTAGCACTATG 922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751729471525