Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5130 125 1e-26 >seq5130 Length=2182 Score = 125 bits (138), Expect = 1e-26 Identities = 139/182 (76%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGT--TCTATTTTGTTGGTTTCTAGG 176 ||| ||||| ||||||||||| ||| | | | ||| |||||||||||||||| | Sbjct 1731 ATATATTAGTATGGAATAATAAGATACGGCTTT-GGTAGTCTATTTTGTTGGTTTGCAC- 1788 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAA 236 || || |||||||||||||| ||| |||||||| |||| | |||||||||||| Sbjct 1789 ACTAGGGTTATGATTAATAGGGACAGTTGGGGGTGTATATATTTCAACGTCAGAGGTGAA 1848 Query 237 ATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 ||||||||||| | |||| | || |||||||| || ||||||||| | ||||||| Sbjct 1849 ATTCTTGGATTGCTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATATGTTCATTA 1908 Query 297 AT 298 || Sbjct 1909 AT 1910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914860140480