Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq15412 82.4 1e-13 >seq15412 Length=1236 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 149 TTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCC 208 || |||||||||||| | ||||||||||| |||||| | | ||||| | | | || Sbjct 544 TTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATATAGTTCTCTCATTCACC 603 Query 209 TTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||| | ||| |||| ||||||||||||||||| |||| Sbjct 604 TTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGGGTA 643 Score = 77.0 bits (84), Expect = 5e-12 Identities = 73/92 (79%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 341 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 399 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATT 98 ||||||| ||||||||||| ||| ||||| Sbjct 400 AAGTTTTTATTAAACAGTCGCAACCCCCTATT 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694150192855