Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq15412 217 4e-54 seq22371 134 3e-29 >seq15412 Length=1236 Score = 217 bits (240), Expect = 4e-54 Identities = 208/268 (78%), Gaps = 9/268 (3%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||||| ||||||||||| | ||||| Sbjct 163 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 222 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 223 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 282 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 |||||||||||||||||| ||| |||| || | || || ||| | Sbjct 283 GAGTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGC---------GCAAACATTTCC 333 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||| ||||| |||||||||||| |||| ||||||||| || || | || |||| Sbjct 334 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 393 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCA 280 ||| || ||||||| |||||||||||| Sbjct 394 AGTCCTAAGTTTTTATTAAACAGTCGCA 421 >seq22371 Length=824 Score = 134 bits (148), Expect = 3e-29 Identities = 200/280 (71%), Gaps = 9/280 (3%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || || | |||| ||| || ||| ||||||||||||| | | |||||||| | Sbjct 545 TAAACAGTATCTGCACTGCTATTCCAATTTCACTGAGACAATCATCGAGACAGCTGTTGC 486 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| | ||||| ||| || | | | ||| | | ||||| ||||||||||||||||| Sbjct 485 ATCGTTAAGTCATTCATGCTGGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGA 426 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 || | || | || ||||||| || | ||||| || ||| | ||| |||| |||| Sbjct 425 CCCTCATAGGTAAGGCCGCCATTAATCGGGGTATCCTTCATAACCTT--AGTTA-TTAAC 369 Query 187 C-----CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTT 240 | || ||| || ||| || |||||| | |||||| | |||| | | || Sbjct 368 CAAGGAAAATTCGTTACCCAGCCGACATTGGGCAGACATCACACTCAATACTTTGATTTT 309 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCA 280 | | |||||||||||||||||||||| |||||||||||| Sbjct 308 TAATCTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCA 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260331801920