Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq15412 224 2e-56
seq22371 84.2 5e-14
>seq15412
Length=1236
Score = 224 bits (248), Expect = 2e-56
Identities = 209/267 (78%), Gaps = 9/267 (3%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | | | ||| ||||| |||||||| | ||||||| | | |||||
Sbjct 163 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 222
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 223 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 282
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
||||||||||||||||||||||| || | | | | ||| | |||| |||
Sbjct 283 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATTTCC 333
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| |||||||||||||||||| ||||| |||||||||| | || | | |||||||
Sbjct 334 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 393
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273
| ||| |||||| |||||||||||
Sbjct 394 AGTCCTAAGTTTTTATTAAACAGTCGC 420
>seq22371
Length=824
Score = 84.2 bits (92), Expect = 5e-14
Identities = 107/147 (73%), Gaps = 8/147 (5%)
Strand=Plus/Minus
Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG----TGCCCAAATCG 64
|||| ||| | ||| ||||||||| ||| | || | ||||||| ||| ||||
Sbjct 537 ATCTGCACTGCTATTCCAATTTCACTGAGACAATCATCGAGACAGCTGTTGC----ATCG 482
Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124
||| | | ||| ||| || | | | ||| | | ||||| ||||||||||||||||||| |
Sbjct 481 TTAAGTCATTCATGCTGGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGACCCT 422
Query 125 TATAGTTACGGCCGCCGTTTACTGGGG 151
|||| || ||||||| || | ||||
Sbjct 421 CATAGGTAAGGCCGCCATTAATCGGGG 395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062005477760
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |