Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq34653 122 2e-25 >seq34653 Length=539 Score = 122 bits (134), Expect = 2e-25 Identities = 142/188 (76%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| ||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 105 TCACTCACTCGGTATTA-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 163 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 164 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 222 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC-TAATCCGACCTAG 202 ||| || ||| | | |||||| | |||| |||||||| | ||||| || | Sbjct 223 CAGCTAAAGATAATAGGCTTGGTAGTCTATTAAACTACCAACTACCATAATCTTACGCAA 282 Query 203 GCTCATCT 210 ||||||| Sbjct 283 ACTCATCT 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071601912800