Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq15024 82.4 1e-13 >seq15024 Length=1279 Score = 82.4 bits (90), Expect = 1e-13 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 54 CAGGCCCGGTGCCGG-CGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAAT 112 || |||||| | ||| |||||| ||||| ||||||||||| ||||| |||| |||||| | Sbjct 1276 CATGCCCGGGGGCGGGCGCTTCCTCCAGCACCTTCTGGTGGCGACGCTGCACCGAGCAGT 1217 Query 113 CGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGT 172 |||| ||| ||| | || | || ||| || ||||| | || || | ||| | || Sbjct 1216 CGCGCTCGAACAGATAGACGCAGTTGCCGTGCGTGTCGGCAAACACCTG-ATTTCGATGT 1158 Query 173 GACGTGGGTTGGTCAGGTACTTTTCCA 199 |||| || ||||| ||||| |||| Sbjct 1157 GACGCGGACGCGTCAGATACTTCTCCA 1131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735735227450