Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01001545.1 Length=359 Score E Sequences producing significant alignments: (Bits) Value seq15880 120 6e-25 >seq15880 Length=1183 Score = 120 bits (132), Expect = 6e-25 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1 CGAAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAAT 60 |||| |||||| || | ||||| ||||||| ||| || | |||||| ||||| |||| Sbjct 833 CGAAATTCGGCTTCTTGAGCAGCACCGGCAGAATGGTCGTCTGCGGCGATGCCTTCGAAT 774 Query 61 ACATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGC 120 |||||||||| |||| ||| || ||||||||||||||||| || | | ||| Sbjct 773 ACATGTAGCAACCGTAGTTCTCGCAGAAGCCGCAGAAGTTGCACGGCCCGAGGCGTACGC 714 Query 121 CATAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAAC 180 | || || || || |||||| | || || || || | ||| | ||| || ||| ||| Sbjct 713 CGTACGGATTCGTATACGGCTCGGACGTGTTCGCTGCCGGTGCGGGGTACGGATTGAAAC 654 Query 181 CGACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCG 234 | || ||| ||||| |||| ||| ||||| || | |||||||| | ||| Sbjct 653 CCACTTCGCGTGCGGCCTTCTCAAAGAGCTGCGCACCGTAGGTGTTTTGCAGCG 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046011419360