Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01002002.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq9839 95.1 1e-17 >seq9839 Length=5901 Score = 95.1 bits (104), Expect = 1e-17 Identities = 121/159 (76%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGG-CT-TCGA 58 || ||||||||||| | || ||||||||||||| ||||| || |||||| || ||| Sbjct 5524 TGATGACCAACATCCCGGGCGTGATGGACAAGGACGGCAATCTGCTGACCGATCTGTCGG 5465 Query 59 CCACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGA 118 | ||| | | | ||||| ||| |||| |||||||| |||| |||||||||||||||| Sbjct 5464 CG-CGCGAGA--TCGACGAACTGTTCGCAGACGGCACGATCTCGGGCGGCATGCTGCCGA 5408 Query 119 AGAT-CCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTG 156 |||| ||| | || || || || | | | |||||||| Sbjct 5407 AGATATCGTCG-GCGCTCGACGCGGCGAAGAGCGGCGTG 5370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534207752105