Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq34653 118 3e-24 >seq34653 Length=539 Score = 118 bits (130), Expect = 3e-24 Identities = 145/194 (75%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | |||||| ||| ||| ||| || ||| |||| |||| ||| || Sbjct 82 CTTTACAACCTAATTAGCCTTCATCACTCACTCGGTATTACTGGATCAAGCTTTCGCTCA 141 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 142 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 200 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | |||| | | Sbjct 201 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTATTAAACTAC 260 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 261 CAACTACCATAATC 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221946061760