Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq34653 192 2e-46 >seq34653 Length=539 Score = 192 bits (212), Expect = 2e-46 Identities = 215/281 (77%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| ||||| | ||||||||| ||| | ||||||| | | ||| |||| | Sbjct 280 GCGTAAGATTATGGTAGTTGGTAGTTTAATAGACTACCAAGCCTATTATCTTTAGCTGGT 221 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||| || ||||| |||||||||| |||||||||||| ||||||| | |||||| Sbjct 220 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAG 162 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| ||| |||||| || ||||| |||| ||| || ||| ||||| ||||| Sbjct 161 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGTAATACCGAGTGAGTGATGA 102 Query 340 AGGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGA 398 |||| | ||| |||||||||| || | ||||| || |||||| |||||| | | || Sbjct 101 AGGCTAATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGA 42 Query 399 AGCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACG 437 || |||||||| || |||||||||||||||||||||||| Sbjct 41 AGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497043866240