Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq8183 89.7 1e-15 seq25653 82.4 1e-13 seq5985 82.4 1e-13 >seq8183 Length=1018 Score = 89.7 bits (98), Expect = 1e-15 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 112 aGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| Sbjct 129 AGGAAATAACAGGTCTGTGATGCCCTTAGACGTTCTGAGCCGCACGCGCACTACACTGA 187 >seq25653 Length=731 Score = 82.4 bits (90), Expect = 1e-13 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 ||||||||||||| || | || ||| ||| |||||||| |||||||| | | | Sbjct 573 AGGTCTGGGTAATTTTATGAATTCGCATCGAGCTAGGGATAGACTGTTGCAATTTTCGGT 514 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| |||||||||| ||||||| ||| || ||||| || |||||||||||| Sbjct 513 CTTGAACGAGGAATTTCTAGTAAACGCAAGTTGTCAGCTTGCATTGATTACGTCC 459 >seq5985 Length=2543 Score = 82.4 bits (90), Expect = 1e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||||| |||||||| |||||||| | |||| |||||||||| |||||||| | | Sbjct 918 GTGCTAGGGATAGAATGTTGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACCCAA 859 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGC 320 |||||||| || |||||||||||||||| Sbjct 858 CTCATCAGCTTGCATTGATTACGTCCCTGC 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946848257280