Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq17834 183 6e-44 >seq17834 Length=1008 Score = 183 bits (202), Expect = 6e-44 Identities = 182/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| |||||| | | |||||||||||||||| | ||| ||||| ||| |||| Sbjct 352 GGTGGAT--CTTGGCAGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGTGTCGGG 295 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCG--GCCCTTTGG 127 ||| |||| || |||||||||| || ||||||||||||||||| || | | Sbjct 294 GAGCTGGCAA-CAAGCTTTGATCCGGCAATGTCCGAATGGGGAAACCCACCGCGCAAGCG 236 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAG 187 || || |||| ||||||||||| ||||| | |||||| ||| ||||||||| ||||||| Sbjct 235 GT-ATCGCATAGTGAATACATAGCTATGCGAGGCGAACCCGGGGAACTGAAATATCTAAG 177 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 || | | ||||||||||||||||||||||||| ||||| | |||||||| Sbjct 176 TACCCGGAGGAAAAGAAATCAACCGAGATTCCGTCAGTAGCGACGAGCGAA 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918058952160